Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs12778080 chr10:27573721 A/G 2.11E-12 129 42.27 45.83 20.6 KM Plot
TGCT rs12789816 chr11:6933160 G/T 9.99E-5 134 42.18 37.65 83.73 KM Plot
TGCT rs12870992 chr13:21846019 A/G 5.3E-7 134 14.42 37.53 42.27 KM Plot
TGCT rs12972252 chr19:37937242 G/A 1.37E-13 134 45.47 37.53 17.1 KM Plot
TGCT rs12981532 chr19:37889280 G/A 1.37E-13 134 45.47 37.53 17.1 KM Plot
TGCT rs12998792 chr2:242134857 A/G 0.000147 134 120.27 46.3 41.97 KM Plot
TGCT rs13003061 chr2:3482722 C/T 1.99E-5 133 40.57 66.17 25.32 KM Plot
TGCT rs13006095 chr2:3486352 G/A 2.43E-5 131 40.57 66.17 25.32 KM Plot
TGCT rs13011528 chr2:3486594 G/A 2.43E-5 131 40.57 66.17 25.32 KM Plot
TGCT rs13040540 chr20:57202515 C/T 2.4E-9 133 37.3 60.68 9.02 KM Plot
TGCT rs13062465 chr3:172540497 A/G 5.03E-5 134 42.03 41.92 47.38 KM Plot
TGCT rs13115740 chr4:47465847 G/T 2.67E-5 134 47.48 36.37 48.35 KM Plot
TGCT rs13129226 chr4:47439503 G/A 0.00014 132 45.83 36.1 51.6 KM Plot
TGCT rs13162596 chr5:42576257 A/G 3.93E-7 130 40.57 63.68 20.23 KM Plot
TGCT rs13193863 chr6:42655094 C/T 4.0E-8 131 37.62 47.52 20.6 KM Plot